AttributeError: 'Annotation' object has no property 'text_from_points'

[zhoujj]

When we run BINDetect, we come across this problem:

2023-06-06 23:11:56 (20600) [INFO] Processing scanned TFBS individually
2023-06-06 23:11:56 (20600) [INFO] Progress 0%
2023-06-06 23:11:56 (20600) [INFO] Progress 8.3%
2023-06-06 23:11:56 (20600) [INFO] Progress 66.7%
2023-06-06 23:11:57 (20600) [INFO] Progress 100.0%
2023-06-06 23:11:57 (20600) [INFO] Progress done!
2023-06-06 23:11:57 (20600) [INFO] Concatenating results from subsets

2023-06-06 23:11:57 (20600) [INFO] Writing all_bindetect files
2023-06-06 23:11:57 (20600) [INFO] Creating BINDetect plot(s)
2023-06-06 23:11:57 (20600) [INFO] - D3 / D7 (static plot)
Traceback (most recent call last):
File "/home/zhoujj/anaconda2/envs/TOBIAS/bin/TOBIAS", line 8, in
sys.exit(main())
File "/home/zhoujj/anaconda2/envs/TOBIAS/lib/python3.7/site-packages/tobias/TOBIAS.py", line 154, in main
args.func(args)
File "/home/zhoujj/anaconda2/envs/TOBIAS/lib/python3.7/site-packages/tobias/tools/bindetect.py", line 819, in run_bindetect
fig = plot_bindetect(motif_list, clustering, [cond1, cond2], args)
File "/home/zhoujj/anaconda2/envs/TOBIAS/lib/python3.7/site-packages/tobias/tools/bindetect_functions.py", line 769, in plot_bindetect
adjust_text(txts, ax=ax1, add_objects=[l], text_from_points=True, arrowprops=dict(arrowstyle='-', color='black', lw=0.5)) #, expand_text=(0.1,1.2), expand_objects=(0.1,0.1))
File "/home/zhoujj/anaconda2/envs/TOBIAS/lib/python3.7/site-packages/adjustText/init.py", line 738, in adjust_text
**kwargs
File "/home/zhoujj/anaconda2/envs/TOBIAS/lib/python3.7/site-packages/matplotlib/axes/_axes.py", line 666, in annotate
a = mtext.Annotation(text, xy, *args, **kwargs)
File "/home/zhoujj/anaconda2/envs/TOBIAS/lib/python3.7/site-packages/matplotlib/text.py", line 1825, in init
Text.init(self, x, y, text, **kwargs)
File "/home/zhoujj/anaconda2/envs/TOBIAS/lib/python3.7/site-packages/matplotlib/text.py", line 160, in init
self.update(kwargs)
File "/home/zhoujj/anaconda2/envs/TOBIAS/lib/python3.7/site-packages/matplotlib/text.py", line 172, in update
super().update(kwargs)
File "/home/zhoujj/anaconda2/envs/TOBIAS/lib/python3.7/site-packages/matplotlib/artist.py", line 1067, in update
raise AttributeError(f"{type(self).name!r} object "
AttributeError: 'Annotation' object has no property 'text_from_points'

Could you please help me with this?

Package Version

---

adjustText 0.8
args 0.1.0
biopython 1.81
boto3 1.26.147
botocore 1.29.147
clint 0.5.1
configs 3.0.3
coverage 7.2.7
cycler 0.11.0
Cython 0.29.35
docutils 0.20.1
fonttools 4.38.0
jmespath 1.0.1
joblib 1.2.0
kiwisolver 1.4.4
kneed 0.8.3
logomaker 0.8
mamba 0.11.2
matplotlib 3.5.3
MOODS-python 1.9.4.1
numpy 1.21.6
packaging 23.1
pandas 1.3.5
Pillow 9.5.0
pip 22.3.1
pybedtools 0.9.0
pyBigWig 0.3.22
pyfastaq 3.17.0
pyparsing 3.0.9
PyPDF2 3.0.1
pysam 0.21.0
python-dateutil 2.8.2
pytz 2023.3
PyYAML 6.0
reportlab 4.0.4
s3transfer 0.6.1
scikit-learn 1.0.2
scipy 1.2.0
seaborn 0.12.2
setuptools 65.5.1
six 1.16.0
statistics 1.0.3.5
svist4get 1.3.1
threadpoolctl 3.1.0
tobias 0.15.1
typing_extensions 4.6.3
urllib3 1.26.16
Wand 0.6.11
wheel 0.38.4
XlsxWriter 3.1.2

[Mette Bentsen, PhD]

Hi,

This is an error coming from another library - please downgrade adjustText to <0.8 as also discussed here: #182 (comment)

That should solve the issue - otherwise please let us know, thanks!