looooongChen

instance_segmentation_with_pixel_embeddings

Instance segmentation via deep pixel embedding

instSeg

Instance segmtnation via pixel embedding learning

MRBrainS-Brain-Segmentation

tfAugmentor

An image augmentation library for tensorflow. It can be used seamlessly with tf.data.Dataset

IMANNO

an image annotation toolkit

minimal-blog

Demo website

mws

Mutex watershed for image segmentation without seeds

shape_prior_seg

sortedAP

BEAR

Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 2021.

cellpose

a generalist algorithm for cellular segmentation

CellTracking

DeepCAD

DeepCAD: Deep self-supervised learning for calcium imaging denoising

dl-utils

FreeU

FreeU: Free Lunch in Diffusion U-Net

kuzushiji_recognition

LMBI

looooongChen.github.io

omnipose

Repository for the Omnipose package and associated scripts for the paper.

PNS-Cyst

SimCLR

PyTorch implementation of SimCLR: A Simple Framework for Contrastive Learning of Visual Representations by T. Chen et al.

stardist

StarDist - Object Detection with Star-convex Shapes

STNeuroNet

Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Proceedings of the National Academy of Sciences (PNAS), 2019.

Swin-Transformer-Segmentation

Swin-Transformer-based Segmentation Model

tf-image-augm

tensorflow image augmentations