Logan Schneider's repositories
fam2PLINKpheno-cov
From PLINK *.fam files and phenotype/covariate databases, generates PLINK pheno and cov files for GWAS
imputed2snptest
Concatenates IMPUTE2 chunks as *.gen file and generates related *.sample base files from pre-imputed genotypes
IMPUTEfromGitHub
This is a script that assembles latest imputation pipeline files from GitHub and the runs imputation on the specified QCed files
4UMich
Prep for UMichigan imputation server
assembleFROMcohorts
A shell script that will recursively search over the directory/subdirectories to find and extract individuals from an ID list that are present in multiple different PLINK binary files in many different locations
BI-ENRICH-LN
BI-ENRICH-LN
cohort2keep
A script that uses PLINK to determine optimal MDS dimensions to use to adjust for population stratification
contrastive
Contrastive PCA
DaylightSaving-Seizures
Analysis of DST-related seizure incidence in Seizure Tracker data from 2008-2016 with over 12 million documented seizures.
hypersomniaML
Machine learning methods for categorization of hypersomnias/controls from PSG & MSLT data
IMPUTE-PIPELINE-MIGNOT-LAB
A pipeline to impute plink genotypes to 1000 Genomes phase 1
IMPUTE_PIPELINE_MIGNOT_SLURM_VER
This pipeline is a slurm version of the IMPUTE_PIPELINE
machine-learning
:earth_americas: machine learning algorithms tutorials (mainly in Python3)
multitaper_toolbox
Code for computing multitaper spectrogram implemented in Matlab, Python, and R
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
SpectralAnalysis
Batch extraction of spectral data from SpectralTrainFig outputs for interpretation/analysis
Spoon-Knife
This repo is for demonstration purposes only.