Refactor observations
ljvmiranda921 opened this issue · comments
Lj Miranda commented
I think it's better for our observation space to be a grid rather than a chain:
- Create a matrix of shape
(m, m)
matrix wherem = 2 * len(seq) + 1
- Get the midpoint of that grid and treat that as origin. That's why you want to have odd number of cells
- The grid should have values in
{-1, 0, 1}
for polar, unassigned, and hydrophobic separately