Zi Liu's repositories
alphafold
Open source code for AlphaFold.
alphafold_non_docker
AlphaFold2 non-docker setup
antibody_benchmark
Antibody-Antigen Docking and Affinity Benchmark
biocode
Bioinformatics code libraries and scripts
CAFA2
Matlab Evaluation codes for the 2nd CAFA experiment
CAFA3
University of Turku CAFA3 project
CAFA_assessment_tool
Precision-Recall based assessment for CAFA
cdhit
Automatically exported from code.google.com/p/cdhit
ColabFold
Making Protein folding accessible to all via Google Colab!
DeepLearning_tutorials
The deeplearning algorithms implemented by tensorflow
DeepMetaPSICOV
Deep ResNet-based protein contact prediction
diamond
Accelerated BLAST compatible local sequence aligner.
DNCON2
Deep convolutional neural networks for protein contact map prediction
DRN-PyTorch
PyTorch implementation of Dilated Residual Networks for semantic image segmentation
EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
hh-suite
Remote protein homology detection suite.
MobilePose-pytorch
Light-weight Single Person Pose Estimator
PDBParser
PDBParser
plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
pytorch-cifar
95.16% on CIFAR10 with PyTorch
RaptorX-Contact
Deep residual neural network for protein contact/distance prediction developed by Xu group
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
trRosetta
A package to predict protein inter-residue geometries from sequence data
trRosetta2
Repository for publicly available deep learning models developed in Rosetta community