liulab-dfci / MAESTRO

Single-cell Transcriptome and Regulome Analysis Pipeline

Input seurat integration object

mudappathir opened this issue 3 years ago · comments

mudappathir commented 3 years ago

Hi,

I am running Seurat pipeline similar to this: https://satijalab.org/seurat/archive/v3.0/immune_alignment.html

Can I input the integrated seurat object as input to MAESTRO RNARunSeurat function?

Ming Tang commented 3 years ago

@mudappathir the input for this function is a matrix https://github.com/liulab-dfci/MAESTRO/blob/master/R/RNARunSeurat.R#L51
we use Seurat under the hood.