OutOfMemoryError
carschno opened this issue · comments
Hi,
I run Mr.LDA VariationalInference on a data set with the following basic parameters:
14/07/24 11:43:58 INFO mrlda.VariationalInference: Total number of documents is: 605830 14/07/24 11:43:58 INFO mrlda.VariationalInference: Total number of terms is: 2573070
In Iteration 2, all map jobs fail due to OutOfMemoryError exceptions:
14/07/24 11:59:01 INFO mapreduce.Job: Task Id : attempt_1403876159389_0503_m_00 0041_2, Status : FAILED Error: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java: 75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:426) at org.apache.hadoop.mapred.MapTask.run(MapTask.java:342) at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:168) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:415) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1548) at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:163) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcce ssorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 9 more Caused by: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapRunner.configure(MapRunner.java:38) ... 14 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 17 more Caused by: java.lang.OutOfMemoryError: Java heap space at cc.mrlda.DocumentMapper.importBeta(DocumentMapper.java:514) at cc.mrlda.DocumentMapper.configure(DocumentMapper.java:116) ... 22 more
This is re-producibly with varying parameters regarding corpus size, number of mapper, heap size (tried up to 32GB).
Our Hadoop cluster comprises 24 nodes with a total of 504 CPU cores and 1.1TB RAM.