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linsalrob / partie

PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.

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16S db corrupted?

rdoughty10 opened this issue · comments

commented

Hello,

I am trying to use partie and after following the installation instructions. I tried running the tool and have gotten this error:

Error: 16S database corrupted
Runing the command /home/software/miniconda3/envs/ww_env/bin/bowtie2-inspect -s .//db/16SMicrobial
/home/software/miniconda3/envs/ww_env/bin/bowtie2-inspect-s: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory

I have tried deleting and redownloading the database, but I continue to get this error.

Just wanted to check and make sure that databses are still maintained or if I am doing something wrong?

Thanks

commented

Hi

You are not doing anything wrong.

This is an error with bowtie and conda and the problem and solution is described in this biostars post.

Essentially, the problem is with libtbb.so versioning.