lindermanlab / ssm

Bayesian learning and inference for state space models

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error during installation

samdeoxys1 opened this issue · comments

During the last step of the installation: pip install -e ., I got:
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We made some recent changes to setup.py and I’m afraid we dropped the include_dirs keyword. I’ll push a fix asap, but in the meantime can you please try updating setup.py and rerunning, as suggested in this post on stack Overflow? https://stackoverflow.com/questions/14657375/cython-fatal-error-numpy-arrayobject-h-no-such-file-or-directory

@slinderman I had the same problem. Your suggestion worked for me to fix it.

I added the numpy include directory to setup.py in 38b2883. Please let me know if this fixes your installation problem @samdeoxys1.

The installation works now! Thanks!