Fatal warning during installation: givaro/givconfig.h - no such file or directory

Question

Fatal warning during installation: givaro/givconfig.h - no such file or directory

HereAround opened this issue 5 years ago · comments

I am trying to install linbox on Ubuntu18.04. Unfortunately, I receipt several warning about givaro/givconfig.h not being present. How can I resolve this?

Explicitly, I use this git-repository (I am at commit 553ba48 from 19/12/2019) and have followed the instructions at https://linalg.org/linbox-html/install-dist.html for the installation. I have thus issued the linbox-auto-install.sh with the following options:

./linbox-auto-install.sh --prefix=/my-lib-folder --enable-openblas=y --enable-blis=y --enable-gmp=y --enable-check=y --enable-optimization=y --enable-drivers=y

where 'my-lib-folder' my chosen folder for the libraries. This script finishes by reminding me to issue "
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:my-lib-folder'". However, it also issues a critical warning just before that:

../../linbox/integer.h:44:10: fatal error: givaro/givconfig.h: No such file or directory
#include <givaro/givconfig.h>

In my case, this file is located in three locations:

/linbox/build/givaro/src/kernel/system/givconfig.h
my-lib-folder/include/givaro/givconfig.h
in my Sage installation

I have issued "export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:my-lib-folder" hoping that then, the file my-lib-folder/include/givaro/givconfig.h would be found. However, if I now issue "make", then the same warning appears again and make finishes by

Makefile:601: recipe for target 'check-recursive' failed
make: *** [check-recursive] Error 1

I have also issued "make check". Here is its summary:

TOTAL: 35
PASS: 35
SKIP: 0
XFAIL: 0
FAIL: 0
XPASS: 0
ERROR: 0

Below this printout, however, again the above warning is being raised and it finishes by

Makefile:601: recipe for target 'check-recursive' failed
make: *** [check-recursive] Error 1

For completeness, here is the output of make fullcheck:

./checker
test-bitonic-sort build OK, run OK.
test-blackbox-block-container build OK, run OK.
test-blas-domain build OK, run OK.
test-blas-matrix build OK, run OK.
test-block-wiedemann build OK, run OK.
test-butterfly build OK, run OK.
test-charpoly build OK, run OK.
test-commentator build OK, run OK.
test-companion build OK, run OK.
test-cra build OK, run OK.
test-cradomain build OK, run FAIL
test-dense build OK, run OK.
test-dense-zero-one skipped, half baked, bds responsible
test-det build OK, run OK.
test-diagonal build OK, run OK.
test-dif build OK, run OK.
test-direct-sum build OK, run OK.
test-dyadic-to-rational build OK, run OK.
test-echelon-form build OK, run OK.
test-ffpack build OK, run OK.
test-fft build OK, run OK.
test-fibb build OK, run OK. incomplete
test-frobenius build OK, run OK.
test-frobenius-large skipped, NTL not present
test-frobenius-small skipped, NTL not present
test-getentry build OK, run OK.
test-gf2 build OK, run OK.
test-givaro-interfaces build OK, run OK.
test-givaropoly build OK, run OK.
test-givaro-zpz build OK, run OK.
test-givaro-zpzuns build OK, run OK.
test-gmp-rational build OK, run OK.
test-hadamard-bound build OK, run OK.
test-hilbert build OK, run OK.
test-hom build OK, run OK.
test-invariant-factors skipped, NTL not present
test-inverse build OK, run OK.
test-isposdef build OK, run OK.
test-ispossemidef build OK, run OK.
test-last-invariant-factor build OK, run OK.
test-local-smith-form-sparseelim build OK, run OK.
test-matpoly-mult build OK, run OK.
test-matrix-domain build OK, run OK.
test-matrix-stream build OK, run OK.
test-minpoly build OK, run FAIL
test-modular-balanced-double build OK, run OK.
test-modular-balanced-float build OK, run OK.
test-modular-balanced-int build OK, run OK.
test-modular-double build OK, run OK.
test-modular-float build OK, run OK.
test-modular-int build OK, run OK.
test-moore-penrose build OK, run OK.
test-mpi-comm skipped, MPI not present
test-ntl-hankel skipped, NTL not present
test-ntl-lzz_p skipped, NTL not present
test-ntl-lzz_pe skipped, NTL not present
test-ntl-lzz_pex skipped, NTL not present
test-ntl-lzz_px skipped, NTL not present
test-ntl-rr skipped, NTL not present
test-ntl-sylvester skipped, NTL not present
test-ntl-toeplitz skipped, NTL not present
test-ntl-zz_p skipped, NTL not present
test-nullspace build OK, run OK.
test-one-invariant-factor build OK, run FAILprobalistic algorithm, sometimes fails
test-opencl-domain skipped, OpenCL not present
test-optimization skipped, not unit/regression test conforming
test-order-basis build OK, run OK.
test-param-fuzzy build OK, run OK. Noncompliant field
test-permutation build OK, run OK.
test-plain-domain build OK, run OK.
test-poly-det skipped, incomplete test (if still relevant)
test-polynomial-ring build OK, run OK.
test-qlup build OK, run OK.
test-quad-matrix skipped, half baked, bds responsible
test-randiter-nonzero-prime build OK, run OK.
test-random-matrix build OK, run OK.
[PASS]: data/rk9_7_10.sms rank 10
[PASS]: data/rk9_7_10.sms rank 9 mod 7
test-rank-ex build OK, run OK.
test-rank-Int build OK, run OK.
test-rank-md build OK, run OK.
test-rank-u32 build OK, run OK.
test-rat-charpoly skipped, stale test. solns over QQ need fresh tests
test-rational-matrix-factory build OK, run OK.
test-rational-reconstruction-base build OK, run OK.
test-rational-solver-adaptive build OK, run OK.
test-rational-solver build OK, run OK.
test-rat-minpoly skipped, stale test. solns over QQ need fresh tests
test-rat-solve skipped, infinite loop
test-regression2 build OK, run OK.
test-regression build OK, run OK.
test-scalar-matrix build OK, run OK.
test-serialization build OK, run OK.
test-smith-form-adaptive build OK, run OK.
test-smith-form-binary build OK, run FAIL
test-smith-form build OK, run OK.
test-smith-form-iliopoulos build OK, run OK.
test-smith-form-local build OK, run OK.
Expected smith form SL: {{1,8}{1440000,1}{0,2}}
Computed Smith form SL: {{1,8}{1440000,1}{0,2}}
PASSED.
Expected smith form: [1, 1, 1, 1, 1, 1, 1, 1, 1440000, 0, 0]
Computed Smith form: [1, 1, 1, 1, 1, 1, 1, 1, 1440000, 0, 0]
PASSED.
Expected smith form SL: {{1,23}{10,1}{1560,1}}
Computed Smith form SL: {{1,23}{10,1}{1560,1}}
PASSED.
Expected smith form: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 10, 1560]
Computed Smith form: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 10, 1560]
PASSED.
Expected smith form SL: {{1,22}{2,1}{66,2}{198,1}{15444,1}{0,3}}
Computed Smith form SL: {{1,22}{2,1}{66,2}{198,1}{15444,1}{0,3}}
PASSED.
Expected smith form: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 66, 66, 198, 15444, 0, 0, 0]
Computed Smith form: [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 66, 66, 198, 15444, 0, 0, 0]
PASSED.
test-smith-form-valence build OK, run OK.
test-solve build OK, run OK. most of the tests are commented out
test-solve-full build OK, run OK.
test-solve-nonsingular build OK, run OK.
test-sparse build OK, run OK.
test-sparse-map-map skipped, const issue in givranditer, curious use of nonexistant next() in Extension
test-subiterator build OK, run OK.
test-submatrix build OK, run OK.
test-subvector build OK, run OK.
test-sum build OK, run OK.
test-toeplitz skipped, NTL not present
test-toeplitz-det skipped, NTL not present
test-toom-cook build OK, run OK. one method does not work
test-trace build OK, run OK.
test-transpose build OK, run OK.
test-triplesbb build OK, run OK.
test-triplesbb-omp build OK, run OK.
test-tutorial build OK, run OK.
test-vector-domain build OK, run OK.
test-weak-popov-form skipped, NTL not present
test-zero-one build OK, run OK.

Of 117 tests, 88 passed, 0 failed to compile, 4 failed at runtime, and 25 were skipped.

Makefile:3221: recipe for target 'fullcheck' failed
make[1]: *** [fullcheck] Error 255
make[1]: Leaving directory '/home/i/HDD/Computer/Mathematics_software/linbox/tests'
Makefile:1030: recipe for target 'fullcheck' failed
make: *** [fullcheck] Error 2

Martin Bies · Answer 1 · Tue Jan 28 2020 22:34:23 GMT+0800 (China Standard Time)

Allow me to add more details. Since https://ci.inria.fr/linbox/job/LinBox/ tells me that the latest build fails, I have also tried the latest stable version according to jenkins:

git reset --hard cd24ff6
./linbox-auto-install.sh

This also leads to the above issue.

Jean-Guillaume Dumas · Answer 2 · Thu Feb 20 2020 06:17:23 GMT+0800 (China Standard Time)

Hello, sorry cannot reproduce that one.
Can you post (or send me the 'linbox-auto-install.log' ?

Martin Bies · Answer 3 · Fri Feb 21 2020 05:16:14 GMT+0800 (China Standard Time)

By now, I have installed linbox from the sources, i.e. without using the linbox-auto-install.sh.

Still, for your convenience, I have just reproduced the above error once more. I send you the log by email.

Jean-Guillaume Dumas · Answer 4 · Fri Feb 21 2020 16:41:17 GMT+0800 (China Standard Time)

OK. This is some errors in the drivers for Maple in the interfaces/driver directory.
If you are not using Maple everything should be fine (just remove the '--enable-drivers=y' option).
I flag this as a prolem in these drivers.