lh3 / seqtk

Toolkit for processing sequences in FASTA/Q formats

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Quality scores

lskatz opened this issue · comments

Hi, would it be possible to compute average quality scores from fastq files in seqtk comp? You can trim based on them but I don't see a mechanism to report them. Thank you!

Ah I found this in seqtk fqchk $R1 in the ALL line.