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lh3 / bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

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Could anyone tell me the exact meaning of '-5SP'?

hanshanmengqi opened this issue · comments

commented

Hello,

I'm new to the BWA software, and I don't understand the parameter '-5SP' in bwa mem.
Could anyone explain it to me?

Thanks!
Han