leoisl

bacterial_assembly_pipeline

miniphy-cobs

make_prg

Code to create a PRG from a Multiple Sequence Alignment file

plasnet

Clustering, visualising and exploring plasmid networks

pandora_workflow

pangenome_variations

paper_pandora2020_analyses

average

awesome-cpp

A curated list of awesome C++ (or C) frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff.

bioconda-recipes

Conda recipes for the bioconda channel.

cobs

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

CppCoreGuidelines

The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

django-mwe

A minimal working example of an app in django

django-mwe2

grp_meeting

grp_meeting_test

hello-mess-nf

A Nextflow pipeline to experiment with DSL2 + Zero Mess

igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

mob_recon_snakemake

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mof-search

BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours

multi-package-containers

Testing building mulled containers for multi-requirement tools.

pandora

Pan-genome inference and genotyping with long noisy or short accurate reads

pandora_paper_roc

python_in_condaenv_in_snakemake_in_poetry_env

skills-github-pages

My clone repository

test_disk_speed_in_cluster

three.js

JavaScript 3D Library.

threejs-example

tree_building_from_pandora_VCF