legaultmarc

mattermost

Mattermost is an open source platform for secure collaboration across the entire software development lifecycle..

jstat

JavaScript Statistical Library

pymf

Python Matrix Factorization Module

data-science-blogs

A curated list of data science blogs

blocks

A Theano framework for building and training neural networks

mixmogam

Mixed Model Package For Genome-wide association mapping.

pyxley

Python helpers for building dashboards using Flask and React

beakerx

Beaker Extensions for Jupyter Notebook

genomicspapers

The Leek group guide to genomics papers

pytest

The pytest framework makes it easy to write small tests, yet scales to support complex functional testing

Theano-Tutorials

Bare bones introduction to machine learning from linear regression to convolutional neural networks using Theano.

the-art-of-command-line

Master the command line, in one page

OpenDeep

Modular & extensible deep learning framework built on Theano.

pymc

Bayesian Modeling and Probabilistic Programming in Python

ldsc

LD Score Regression (LDSC)

hgvs

HGVS variant name parsing and generation

pycon_2015_bokeh_talk

SHARE

SHARE is building a free, open, data set about research and scholarly activities across their life cycle.

boltons

🔩 Like builtins, but boltons. 250+ constructs, recipes, and snippets which extend (and rely on nothing but) the Python standard library. Nothing like Michael Bolton.

PheWAS

The PheWAS R package

hyperopt

Distributed Asynchronous Hyperparameter Optimization in Python

circles-sines-signals

A Compact Primer on Digital Signal Processing

BCALM

de Bruijn CompAction in Low Memory

vivus

JavaScript library to make drawing animation on SVG

statsmodels

Statsmodels: statistical modeling and econometrics in Python

ngsxml

generating workflows with XML and XSLT

numpy-100

100 numpy exercises (with solutions)

pytabix

:card_index: Retrieve data in genomic intervals with a Python interface for tabix.

NtSeq

JavaScript (node + browser) bioinformatics library for nucleotide sequence manipulation and analysis.

Pyg

GTF reader for python