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lcolladotor / derfinder

Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches

Home Page:http://lcolladotor.github.io/derfinder

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Improve doc: filterData() after fullCoverage()

lcolladotor opened this issue · comments

commented

Emphasize that you need to use filterData() after fullCoverage() (when using default cutoff=NULL) before using analyzeChr(). Otherwise you would attempt to calculate F-stats in all bases of the genome including those for which there is no data in any of the samples.