handle strand-specific alignments?
alyssafrazee opened this issue · comments
is it possible to handle strand-specific alignments? (i.e. get counts and run the pipeline for each strand separately?)
Related to leekgroup/derfinder#5
Note that related to leekgroup/derfinder#5, you should be aware of how Rsamtools handles the reverse complement issue. More details at
library("Rsamtools")
?scanBamParam