lapis42 / kilosort-runner

Batch processer for Kilosort 2 and 3

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Kilosort batch runner

  • runKs2.m: automated spike-sorting using Kilosort2
  • runKs3.m: automated spike-sorting using Kilosort3
  • runPhy.m: manual spike-sorting using Phy (for windows only)
  • saveKs.m: save phy format as a matlab struct
  • viewRaw.m: raw binary data viewer (for SpikeGLX bin files)
>> runKs2('/mnt/data')
*****************************************
******** Batch Kilosort2 sorting ********
*****************************************

1: ...imec0/ANM480363_20210524_pfc301_hpc200_g0_t0.imec0.ap.bin
2: ...imec1/ANM480363_20210524_pfc301_hpc200_g0_t0.imec1.ap.bin

[1] Add folder
[2] Add file
[3] Delete file selection
[4] Set channel to exclude
[5] View raw data
[s] Start
[q] Quit
>> s

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Batch processer for Kilosort 2 and 3


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Language:MATLAB 81.4%Language:M 18.6%