nutellaBear's repositories
MOOSE
MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.
QIMP-tools
This repository contains software tools developed/adopted by the Quantitative Imaging and Medical Physics (QIMP) team, Medical University of Vienna.
Nuclear-medicine-cheatsheet
A comprehensive and structured knowledge base on nuclear medicine, designed to offer quick insights into its principles, techniques, and applications. Dive deep into topics from imaging modalities to the latest trends, all in a user-friendly markdown format."
pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
itkwidgets
Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D
markdown-content
Markdown content for the www.aerobatic.io website
SimpleElastix
Multi-lingual medical image registration library
Tutorials
Here, we will be showcasing our seminar series “CPP for Image Processing and Machine Learning” including presentations and code examples. There are image processing and machine learning libraries out there which use C++ as a base and have become industry standards (ITK for medical imaging, OpenCV for computer vision and machine learning, Eigen for linear algebra, Shogun for machine learning). The documentation provided with these packages, though extensive, assume a certain level of experience with C++. Our tutorials are intended for those people who have basic understanding of medical image processing and machine learning but who are just starting to get their toes wet with C++ (and possibly have prior experience with Python or MATLAB). Here we will be focusing on how someone with a good theoretical background in image processing and machine learning can quickly prototype algorithms using CPP and extend them to create meaningful software packages.
ubuild-jekyll
A Jekyll theme designed to work with Forestry Blocks
unsupervised-image-clustering
An unsupervised image clustering algorithm that uses VGGNet for image transformation. Python, scikit-learn and tensorflow.
FALCON
FALCON is a Python-based software application designed to facilitate PET motion correction, both for head and total-body scans. Our program is built around the fast 'greedy' registration toolkit, which serves as the registration engine. With FALCON, users can enjoy a streamlined experience for implementing motion correction.
FERRET
FERRET - Framework for Enhance: Organized Workflow Library
pytorch-mps
Tensors and Dynamic neural networks in Python with strong GPU acceleration