Richard Oy's repositories
apps-old
FHIR Client app that supports patient search + launching other FHIR apps
causal_inference_python_code
Python code for part 2 of the book Causal Inference, by Miguel Hernán and James Robins
coder
Classification of Cases into Deterministic Categories
CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
CorEx
CorEx or "Correlation Explanation" constructs a hierarchy of maximally informative representations of complex data.
Cyclops
Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
d2l-en
Interactive deep learning book with code, math, and discussions. Available in multi-frameworks.
data.table
R's data.table package extends data.frame:
data_analysis
Streamline a data analysis process
gateplugin-python
Python integration for the GATE framework
hipsMultimodal
analysis repo for hip fracture deep learning study with multimodal models and case-control radiograph matching
icd
Fast ICD-10 and ICD-9 comorbidities, decoding and validation in R. NB use main instead of master for default branch.
jamoviguide.com
A quickstart guide for jamovi
JointAI
Joint Analysis and Imputation of generalized linear models and linear mixed models with missing values
MplusAutomation
The MplusAutomation package leverages the flexibility of the R language to automate latent variable model estimation and interpretation using Mplus, a powerful latent variable modeling program developed by Muthen and Muthen (www.statmodel.com). Specifically, MplusAutomation provides routines for creating related groups of models, running batches of models, and extracting and tabulating model parameters and fit statistics.
opentsdb
A scalable, distributed Time Series Database.
PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
qgis-training
Open-source classes on open-source mapping with QGIS and PostGIS.
rbook
Source files for "Learning Statistics with R"
scikit-learn
scikit-learn: machine learning in Python
SDV
Synthetic data generation for tabular data
susieR
R package for "sum of single effects" regression.
umap
Uniform Manifold Approximation and Projection
xgboost
Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Flink and DataFlow