Kris Sankaran's repositories
glacier_mapping
Mapping glaciers in the Hindu Kush Himalaya, in partnership with ICIMOD.
mbtransfer
`mbtransfer` is an R package for modeling microbiome dynamics. It provides functions for fitting transfer function models, simulating counterfactual trajectories, and selecting significantly perturbed taxa using mirror statistics.
interpretability_review
Code accompanying a review article on interpretability and XAI. Includes examples for both simple (sparse regression) and sophisticated (concept bottlenecks) approaches, using notebooks that can be run in a few minutes.
stat479_s22
Readings for Statistical Data Visualization at UW Madison, Spring 2022.
intro-to-simulation
Melbourne Integrative Genomics short course.
multimedia
multimedia is an R package for multimodal mediation analysis of microbiome data. It has been designed to help integration of relative abundance, survey, and metabolomic data through causal mediation analysis.
methods-bio-data-workshop
Methods for Biological Data Workshop (UW-Madison)
miniLNM
A miniature implementation of the logistic-normal multinomial model.
MolPad
MolPad: An R-Shiny Package for Cluster Co-Expression Analysis in Longitudinal Microbiomics
scLinkedView
Experimental app for visualizing scDesign estimates.
stat436_f24
STAT 436 at UW Madison, Fall 2024.
waveST
R package about wavelet-guided methods for Spatial Transcriptomics