Krebslabrep's repositories
Kreibich_2023_5mC_at_enhancers
Analysis of Single Molecule Footprinting (SMF) data for the analysis of DNA methylation, chromatin accessibility and TF binding. The repository contains all primary code to reproduce the main analyses for the publication "Single molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation" (Kreibich et al., 2023)
Soenmezer_2020_SMF
Basic functions for single molecule TF analysis
SingleMoleculeFootprinting
R package for SMF data analysis
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
Language:PythonNOASSERTION000
Predoc_2022
Datasets for predoc course
Language:HTML000