This repository contains several perl plugin modules for the Ensembl Variant Effect Predictor (VEP). Please refer to the documentation at the top of each file for details of what each plugin does and how to run it, though for most you will just need to put the module in your ~/.vep/Plugins directory (or elsewhere on your $PERL5LIB) and then run the VEP with the argument --plugin <module name>. More documentation on VEP plugins, and on the VEP itself, can be found on the Ensembl website: http://www.ensembl.org/info/docs/tools/vep/script/index.html All software is Copyright (c) 1999-2013 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. For license details, please see: http://www.ensembl.org/info/about/code_licence.html