Ekaterina Kondrateva's repositories

mri-deep-learning-tools

Resurces for MRI images processing and deep learning in 3D

3d-deformable-convolutions

A repository with a basic layer of 3D deformable receptive field for 3D VoxCNN and 3D VoxResNet

machine-learning-with-love

express course in ML to fell in love with

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fmri-fader-net

Fader Networks for domain adaptation on fMRI: ABIDE-II study

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mri-epilepsy-diagnosis

Automated detection of focal cortical dysplasia

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fmri-domain-adaptation-zoo

Domain Adaptation DL methods adapted for functional MRI (fMRI) data analysis. Enjoy building domain-agnostic models on all levels of data abstraction.

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hse-stat-course-2018

NRU HSE Applied Statistics in Machine Learning course

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NEUROML2020

Skoltech course on Machine Learning in Neuroimaging data, Fall 2020.

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mri-schizoprenia-classification

skoltech-mri-3d-classification

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neurobot

Baseline machine learning models for neuroimaging vectorised data: Neuro Baseline Bot

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brainMRIGenerativeModels

This repo contains architectures of generative models for 3D brain MRI scans.

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clinical-statistics

Basic statistical test and canonical machine learning for medical applictions

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dora

Dora is an experiment management framework. It expresses grid searches as pure python files as part of your repo. It identifies experiments with a unique hash signature. Scale up to hundreds of experiments without losing your sanity.

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fMRI-site-adaptation

Improving autism identification with multisite data via site-dependence minimisation and second-order functional connectivity

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kondratevakate

story of my life

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kondratevakate.github.io

Personal Website ^^

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MIDLLatexTemplate

Latex template for the MIDL Conference

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mri-domain-adaptation

Structural MRI encoding on HCP and ABIDE data with different preprocessin level

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multiBrain

A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!

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scibert

A BERT model for scientific text.

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SynthAnatomy

VQ-VAE + Transformer based synthesis of 3D anatomical imaging data

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TReNDS

1st place solution

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UniRes

Model-based super-resolution of medical images, in PyTorch.

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XAI

Papers and code of Explainable AI esp. w.r.t. Image classificiation

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your-brain-mri-visualization

Use `freesurfer` to process your imaging data, and get fancy viz in `blender`

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