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knmkr / dbsnp-pg

PostgreSQL schema for NCBI dbSNP

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convert allele to allele_id

knmkr opened this issue · comments

commented

Converting allele varchar(1024) column in AlleleFreq table to allele_id serial (defined in Allele table) will reduce the data size for AlleleFreq table.

commented

Need to take care of indels.

E.g. rs201930939

  • vcf alleles: G, GCCCACACTCC
  • dbsnp alleles: -, CCCACACTCC