klkeys

PLINK.jl

Julia module to handle PLINK BED files

IHT.jl

A Julia module that implements the (normalized) iterative hard thresholding algorithm(IHT) of Blumensath and Davies. IHT performs feature selection akin to LASSO- or MCP-penalized regression using a greedy selection approach.

proxdist

Code for the numerical experiments from manuscripts for the proximal distance algorithm

FISTA.jl

Accelerated soft- and firm-thresholding algorithms for sparse regression

OMP.jl

A Julia module to perform orthogonal matching pursuit

sage-geuvadis-predixcan

Analysis of transcriptome imputation using paired genotype-expression data from SAGE and GEUVADIS

bioFreelancers

Freelance bioinformaticians directory

cellranger-count

A Nextflow wrapper for cellranger count, flavored with nf-core principles.

cellranger-vdj

A Nextflow wrapper for cellranger vdj, flavored with nf-core principles.

delete-tweets

Delete tweets from your timeline.

ExchangeLeastsq.jl

gala2-ROH

Computational pipeline for GALA II project analyzing runs of homozygosity

geuvadis-predixcan

Pipeline to train and analyze PrediXcan prediction weights using GEUVADIS EUR and YRI populations

ggchrisg

Plotting with glee with our favorite Chris G

MendelBase.jl

MendelBase contains the base functions of OpenMendel.

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

RegressionTools.jl

Various numerical subroutines to facilitate regression

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sage-lungfunction

Analysis and plotting code for SAGE lung function studies

sage-predixcan

Analysis of TWAS in SAGE

test-datasets

Test data to be used for automated testing with the nf-core pipelines