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khughitt / EuPathDB

EuPathDB recipe for the Bioconductor AnnotationHub

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OrgDb datasets missing from recent AH versions?

khughitt opened this issue · comments

commented

E.g.:

AnnotationHub with 895 records
# snapshotDate(): 2022-04-25
# $dataprovider: FungiDB, TriTrypDB, PlasmoDB, MicrosporidiaDB, ToxoDB, CryptoDB, AmoebaDB, PiroplasmaDB, GiardiaDB, TrichDB
# $species: Plasmodium falciparum, Trypanosoma cruzi, Toxoplasma gondii, Cryptosporidium hominis, Trypanosoma brucei, Plasmodium yoelii,...
# $rdataclass: GRanges, TxDb
...

Either the process needs to be updated to make those datasets available, or the README should be updated to not point to these files.

commented

Any update on this issue ? FungiDB OrgDb files are missing from annotationhub