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Khalid Mahmood's repositories

hiplexpipe

An automated pipeline for variant calling in Hi-Plex targeted sequencing.

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afree

A tool for rapid large-scale protein sequence comparison.

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create_panel_of_normals

Snakemake pipeline to create GATK based panel of normals for somatic variant calling

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crpipe

Bioinformatics pipeline based on Ruffus

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ensembl-tools

Ensembl tools including the VEP

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ExAC_genes

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fampipeline

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fastqcsum

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filter_fastq

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gene-burden-calculator

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GenVisR

Genome data visualizations

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hiplexpipe_somatic

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Intro-variant-calling-galaxy

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MelBioInf_docs

Melbourne Bioinformatics documentation in markdown format

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

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offtarget

Plot offtarget reads for targeted sequence data

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ped

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rubraxhmmpipeline

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somatic-target-panel-pipeline

Somatic variant calling pipeline for targeted sequencing for the Colorectal Oncogenomics Group

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svpipeline

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thepipeline

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thepipelinex

A bioinformatics pipeline for variant calling in exome sequence data.

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training-infrastructure

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tutorials

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undr_rover

Unmapped primer directed ROVER

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VarPub

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varstructure

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VarTabView

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vcf2tab

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vcf_annotation_pipeline

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