How to use IndelEnsembler with multi samples
Keliang-Lyu opened this issue · comments
Hi,
I notice that TranSurVeyor and SurVIndel can only build workflow with single sample.
What can I do, if there are 100 samples in my project.
Regards!
IndelEnsembler runs on a single sample. You have to run it on each sample individually. After that, you can cluster the calls using the clustering utility we provide.
IndelEnsembler runs on a single sample. You have to run it on each sample individually. After that, you can cluster the calls using the clustering utility we provide.
Thank you for the reply.
The build.sh only build compare-del and compare-ins
Could I build the clustering utility by using follow command?
g++ -std=c++11 -O2 ssw.c ssw_cpp.cpp clusterer.cpp -o clusterer
Yes, that should build the clusterer.
Yes, that should build the clusterer.
OK. thank you for your relpy