KennthShang

PhaBOX

Local version of the phage identification and analysis web server (tool set)

PhaGCN

GCN classifier for phage taxanomy classification

PhaGCN2.0

CHERRY

Host prediction for phages

PhaMer

Accurate identification of bacteriophages from metagenomic data using Transformer

HostG

Graph convolutional neural network for host prediction

CHEER

Model for taxonomy classification

PhaTYP

PhaTYP: Predicting lifestyle for bacteriophages using BERT

PhaVIP

Phage virion protein classifier

PhaGCN_newICTV

Update model for ICTV2022

MTDP

Multi-Teacher Distillation for Protein embedding

CHERRY_crispr_DATABASE

Database version of CHERRY CRISPR

CHERRY_crispr_MAG

Predict phage-bacteria interaction using CRISPRs

CHERRY_MAGs

MAG version of CHERRY

alphafold_non_docker

AlphaFold2 non-docker setup

bioconda-recipes

Conda recipes for the bioconda channel.

database

dataset

DeepVirFinder

Identifying viruses from metagenomic data by deep learning

github_files

gputil

A Python module for getting the GPU status from NVIDA GPUs using nvidia-smi programmically in Python

homework

KennthShang.github.io

Personal webpage

leetcode-master

《代码随想录》LeetCode 刷题攻略：200道经典题目刷题顺序，共60w字的详细图解，视频难点剖析，50余张思维导图，支持C++，Java，Python，Go，JavaScript等多语言版本，从此算法学习不再迷茫！🔥🔥 来看看，你会发现相见恨晚！🚀

Machine-Learning-Collection

A resource for learning about ML, DL, PyTorch and TensorFlow. Feedback always appreciated :)

PYlogeny

A tool for conversion from assorted NCBI Accessions to NCBI Taxonomy IDs

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

seeker

TarGene

ViFi

Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.