Kat Steinke's repositories
AbsPresTree
Create a phylogenetic tree with an absence/presence matrix of biosynthetic gene clusters
antismash
antiSMASH
Language:PythonAGPL-3.0000
automlst-simplified-wrapper
A fork of autoMLST with a simplified wrapper script bypassing additional organism selection.
CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
Language:PythonApache-2.0000
dmz-antismash
antiSMASH with manual cluster splitting
fieldbioinformatics-update-longshot
The ARTIC field bioinformatics pipeline
Language:PythonMIT000
magician-singularity-containers
Singularity containers for tools using the MAGICIAN pipeline
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ncov
Nextstrain build for novel coronavirus SARS-CoV-2
Language:PythonMIT000
singularity-bbmap-metabat
Standalone Singularity file for Metabat2 and BBMap 36.49
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singularity-camisim-standalone
Standalone Singularity file for CAMISIM fork
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singularity-drep-standalone
Standalone Singularity file for drep
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