Kashif Nawaz's repositories
netCDF-Processing-Pipeline
Processing of netcdf file: Extraction to Plotting Temperature from different Coordinates
RNA-seq-Pipeline-Under-Construction-
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
Language:Python000
bioinformatics-cafe
Unsorted scripts for bioinformatics
Language:Python000
Coursera-Projects
Final projects and assignments of R and Python
Important-one-liners
Important one liners
Language:Python000
pdae_dna_meth
Scripts and important data for the manuscript "Intergenerational epigenetic inheritance in reef-building corals"
Language:PythonGPL-3.0000
RNA-seq-downstream-analysis
RNA-seq differential expression work flow
SimplePrograms
Simple scripts including sorting of vcf files, creating strain-specific reference sequences, extracting sequence from reference fasta using genomic coordinates etc.
Language:Python000
working_with_dna_meth
Pipeline that I use to process DNA methylation data--both theory and implementation included!
Language:PythonGPL-3.0000