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karel-brinda / MiniPhy

Phylogenetic compression of extremely large genome collections [661k β†˜πŸ­πŸ²π—šπ—Άπ—• | BIGSIdata β†˜πŸ°πŸ΄π—šπ—Άπ—• | AllTheBact'23 β†˜πŸ³πŸ±π—šπ—Άπ—•]

Home Page:https://brinda.eu/mof

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Enhancement: do all the `seqtk seq` file conversion at once, parallelized eg by GNU parallel

karel-brinda opened this issue Β· comments

commented

Having a separate rule for each file adds many small overheads and slows down Snakemake.