karel-brinda / MiniPhy

Phylogenetic compression of extremely large genome collections [661k โ†˜๐Ÿญ๐Ÿฒ๐—š๐—ถ๐—• | BIGSIdata โ†˜๐Ÿฐ๐Ÿด๐—š๐—ถ๐—• | AllTheBact'23 โ†˜๐Ÿณ๐Ÿฑ๐—š๐—ถ๐—•]

Home Page:https://brinda.eu/mof

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Add param to config indicating whether Snakemake should use conda

karel-brinda opened this issue ยท comments

In most situations, this adds enormous download requirements so would be great to have an option to switch this off.

Just Mashtree, which is now in a separate env, requires >1.5G of data.