MissingInputException: Missing input files for rule symlink_nw_tree
karel-brinda opened this issue ยท comments
snakemake -j -p
Building DAG of jobs...
WorkflowError:
MissingInputException: Missing input files for rule symlink_nw_tree:
resources/neisseria_gonorrhoeae__01.nw
MissingInputException: Missing input files for rule tree_newick_mashtree:
results/asm/neisseria_gonorrhoeae__01/resources/output/neisseria_gonorrhoeae__01/SRR3360352.fa
results/asm/neisseria_gonorrhoeae__01/resources/output/neisseria_gonorrhoeae__01/ERR223678.fa
results/asm/neisseria_gonorrhoeae__01/resources/output/neisseria_gonorrhoeae__01/SRR3357287.fa
.
.
.
results/asm/neisseria_gonorrhoeae__01/resources/output/neisseria_gonorrhoeae__01/SRR3361293.fa
results/asm/neisseria_gonorrhoeae__01/resources/output/neisseria_gonorrhoeae__01/ERR854938.fa
make: *** [Makefile:10: all] Error 1
This likely was fixed by some of the updates of the pipeline; closing for now.