Input gz decompression doesn't work
karel-brinda opened this issue ยท comments
...when some input files are in the gz format
File path results/asm/nctc//Users/karel/nctc/NCTC9969.fa contains double '/'. This is likely unintended. It can also lead to inconsistent results of the file-matching a
pproach used by Snakemake.
File path results/asm/nctc//Users/karel/nctc/NCTC9997.fa contains double '/'. This is likely unintended. It can also lead to inconsistent results of the file-matching a
pproach used by Snakemake.
MissingInputException in line 31 of /Users/karel/github/my/mof-compress/workflow/rules/tree.smk:
Missing input files for rule tree_newick_mashtree:
results/asm/nctc//Users/karel/nctc/NCTC5656.fa
results/asm/nctc//Users/karel/nctc/NCTC12060.fa
Cannot be reproduced anymore. Probably fixed by some of the pipeline updates.