Kate Hertweck's repositories
CarpentriesCribSheets
instructor notes from Software Carpentry workshops
mt_genome_viz
visualization of the human mitochondrial genome
FieldLabComparison
microbiome analysis of ant colonies
2017-08-07-LBNL
Data Carpentry genomics workshop at LBNL
bacterialGenomics
example genomics workflow for student training
cancer_genomics
Example workflow for cancer genomics analysis using TCGA data
HertweckLabSOPs
Standard operating procedures for generic phylogenetics methods.
2017Merger
A central repository for documents and conversations related to the merger
2018-05-01-noble
website for Noble DC workshop
Blattabacteria
Analyzing a set of genes using phylogenetics and tests for selection
board
Holds public material generated by and for the SCF board.
breastCancerNTM
analysis of breast cancer gene variants
carpentrycon
Information and ideas for CarpentryCon
class-survey
generic code to assess class survey data obtained using Google Forms
collaborative-lesson-development
10 Simple Rules paper on collaborative lesson development
curriculum-advisors
Meeting notes and other documents related to curriculum advisory committees for Software Carpentry lessons.
flyPopGenomics
transposon and LD analysis for replicated experimental evolution fruit fly populations
HNSCCtargetGenes
visualization of somatic mutations in cancer
lesson-example
Example lesson using Software Carpentry template.
matlab-novice-inflammation
Software Carpentry introduction to MATLAB for novices using inflammation data.
organization
Logistical details, Suggestions for discussion topics, Agenda
python-novice-inflammation
Software Carpentry introduction to Python for novices using inflammation data.
r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
r-novice-inflammation
Software Carpentry introduction to R for novices using inflammation data.
REpipe
characterization of TEs from low-coverage genomic sequence data
sql-novice-survey
Software Carpentry introduction to SQL for novices.
tfcb_2018
Course Materials for Tools for Computational Biology Fall 2018
website
Software Carpentry website