jwilber

Jared Wilber's starred repositories

arquero

Query processing and transformation of array-backed data tables.

Language:JavaScriptBSD-3-Clause123900

ProgressivePyramidBasedSampling

Language:C++MIT500

Three-Molecules

Demonstration of drawing molecular diagrams with Three.js

Language:JavaScript400

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Language:PythonBSD-3-Clause9100

d3-tile

Compute the quadtree tiles to display in a rectangular viewport.

Language:JavaScriptBSD-3-Clause12600

glslify

A node.js-style module system for GLSL! :sparkles:

Language:JavaScriptNOASSERTION218800

rapids_singlecell

Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

Language:PythonMIT11900

cosmos

GPU-accelerated force graph layout and rendering

Language:TypeScriptNOASSERTION80000

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

Language:Jupyter NotebookApache-2.031300

morpheus-visualizations

Repository containing all of the visualizations for Morpheus

Language:TypeScript600

quadfeather

Language:Python1800

Mistic

Multiplexed image tSNE visualizer

Language:PythonMIT3100

microscopium

Unsupervised clustering of high content screen samples

Language:PythonBSD-3-Clause7200

colorcet

A set of useful perceptually uniform colormaps for plotting scientific data

Language:PythonNOASSERTION67700

mbview

View mbtiles locally

Language:EJSISC37500

maplibre-gl-js

MapLibre GL JS - Interactive vector tile maps in the browser

Language:TypeScriptNOASSERTION613000

glslViewer

Console-based GLSL Sandbox for 2D/3D shaders

Language:C++BSD-3-Clause457800

cellxgene

An interactive explorer for single-cell transcriptomics data

Language:JavaScriptMIT60300

elephant-in-the-room

Companion repository to our Lause, Berens & Kobak (2024) preprint "The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense" (bioRxiv)

Language:Jupyter NotebookGPL-3.0500