jvwilliams23

pyssam

A Python library for biomedical statistical shape and appearance modelling.

openfoamparser

OpenFOAM Python Parser, parse data in OpenFOAM output files to Numpy array.

turbulent-dispersion-neuralSDE

Modelling particle turbulent dispersion with stochastic differential equations, learned from artificial neural networks using tensorflow/keras.

deepLungFoam

OpenFOAM solver for 3D-0D coupling between upper airways and deep lung.

respiratoryCNN-toolkit

CNN training and segmentation scripts for airway and lung segmentations. Also two pre-trained CNNs are provided.

StokesWallMPPIC

OpenFOAM-6 code to model particle-wall interaction based on experiments detailed by Legendre et al (2005)

coarseningFoam

coarseningFoam fork for OpenFOAM 6. Utilities focus on fluid phase analysis.

respiratorySSAMpy

Statistical shape and appearance model for airways and lung lobes

moose

Multiphysics Object Oriented Simulation Environment

joss-paper

jvwilliams23

Config files for my GitHub profile.

jvwilliams23.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

respiratory2Dto3Dpaper

This repository contains links to relevant software from our paper.

lbann

Livermore Big Artificial Neural Network Toolkit

moopy

Python interface that simplifies (ish) the creation of MOOSE inputs

nif

A library for dimensionality reduction on spatial-temporal PDE

VacuumMesher

Implementing mesh skinning functionality within libMesh, as well as the generation of the vaccum Mesh (The area surrounding a meshed geometry).