Picasso localize crashes when using simulated raw files

Question

Picasso localize crashes when using simulated raw files

mb1069 opened this issue 2 years ago · comments

Picasso version: unknown
Python version: 3.8.10
Operating System: Ubuntu

Description

I simulated a dataset using a 3d PSF, and the simulated yaml file contains an unreadable entry which causes command picasso localize to crash

What I Did

picasso localize -b 31 simulated_file.raw

Error message:
yaml.constructor.ConstructorError: could not determine a constructor for the tag 'tag:yaml.org,2002:python/object/apply:numpy.core.multiarray._reconstruct'

Rafal Kowalewski · Answer 1 · Wed Nov 09 2022 00:46:12 GMT+0800 (China Standard Time)

Hey Miguel,

Can you please send me the .yaml file?

Miguel Boland · Answer 2 · Wed Nov 09 2022 01:43:11 GMT+0800 (China Standard Time)

Hey Miguel,

Can you please send me the .yaml file?

Hi, here's a gist of the file as produced by picasso's simulation module
https://gist.github.com/mb1069/ca68e98849af5df5529cb88ba321d3d1

Rafal Kowalewski · Answer 3 · Wed Nov 09 2022 20:36:33 GMT+0800 (China Standard Time)

Hey Miguel,

Thank you for the data. This is an error we have spotted recently too and it will be solved in the next release this/next week

Bests,
Rafal