Juke34

awesome-awesomeness-bioinformatics

A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas

coordinate_systems

Coordinate systemes in genomics (https://juke34.github.io/coordinate_systems/)

awesome-community-bioinformatics

awesome-genome-annotation

Awesome genome annotation tool list

knowledge

Collection of cheat sheets / overviews / summaries

SAPiN

Summarize Aalignment Pile by Nucleotide

BiTeN

Bioinformatics Template in Nextflow

ifb-staff

AliNe

Nextflow Alignment Pipeline

bioinfoMPT

Calendar Montpellier events in bioinfo/biostat

Bioinformatics_notes

Bioinformatics and genomics resources

gffutils

GFF and GTF file manipulation and interconversion

NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

bacterial_genomics_training

Collection of bioinfo tutorials for training in Bacterial genomics and AMR

bioperl-live

Core BioPerl 1.x code

CRAQ

Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement

EDTA

Extensive de-novo TE Annotator

github-readme-stats

:zap: Dynamically generated stats for your github readmes

gitR

jdpackage

What the Package Does (One Line, Title Case)

Juke34

repository used to add a README.md to the GitHub profile

lookal

minigraph

Proof-of-concept seq-to-graph mapper and graph generator

novatorem

Dynamic realtime profile ReadMe linked with spotify

PIMGAVir

PIpeline for MetaGenomic Analysis of Viral reads from 2nd generation sequencer

proovframe

frame-shift correction for long-read (meta)genomics

rap-green

Phylogenetic tree management, exploration and display package

RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

synteny

An nf-core compliant Nextflow pipeline for running synteny analysis.

workshop-reproducible-research

course: Tools for Reproducible Research