juhuntenburg

laminar_python

Tools for laminar analysis of the cortical sheet in Python

myelinconnect

brainsurfacescripts

python scripts for simple operations on brain surfaces

mouse_gradients

lcfmri

nighres

Processing tools for high-resolution neuroimaging

7T_preprocessing

Scripts for preprocessing of 7T test retest dataset doi:10.1038/sdata.2014.54

bh-lisbon.github.io

Bruker2nifti

Bruker raw to Nifti conversion

calcium_mri

ConnectivityGrowth

datajoint-tutorial

DataJoint Tutorial for IBL pipeline

fast_rsfmri

fmri-analysis

fMRI analysis (requires SPM)

fmri_matlab

gogifti

gsoc2017

My Google Summer of Code development blog at https://juhuntenburg.github.io/gsoc2017/

hcp_corr

load hcp (human connectome project) data, get correlation matrices with less memory usage and faster

iblenv

Unified environment and Issue tracker for all IBL

instrumental_conditioning

labcams

Software to control and record from multiple cameras

mri_processing

mriqc

myelinconnect_unused

remaining code that was not part of the mansucript

nilearn

Machine learning for NeuroImaging in Python

nipype

Workflows and interfaces for neuroimaging packages

openscience_course

pipelines

Neuroimgaing data processing pipelines used in the lab

real

slurm_jobs