jtwang1027 / RNA_Seq

RNA seq data analysis and visualization

RNA Seq

Here we start with an expression matrix generated from DESeq2 and perform various analyses (gene set enrichment analysis and correlation tests) as well as generate common visualizations (heatmaps, venn diagrams, volcano plots, violin plots).

Generating heatmaps

Code (link)

Generating Volcano plots using EnhancedVolcano

Code (link)

Generating Venn Diagrams

Code (link)