jrober84's repositories
HTP_slurm_generator_scripts
Set of scripts for generating bash files for use with slurm
parsityper
Parsimonious genotype composition profiling using kmers
sra-manuscript
Parsing tool for summarizing kraken-translate output
bio_hansel_benchmarking
This repository is for scripts used to produce or analyze data for the bio_hansel manuscript
bioconda-recipes
Conda recipes for the bioconda channel.
Language:ShellMIT000
canSNP
Prototyping cannonical SNP scheme development
Language:Python000
chewBBACA
BSR-Based Allele Calling Algorithm
Language:JavaScriptGPL-3.0000
cladeomatic
SNP population structure detection
mobclustering
Benchmarking methods for plasmid clustering
population_genetics
population genetics analysis tools and scripts
salmonella_plasmid_dynamics
Code used to process interim files and visualize plasmid and gene associations
Language:PHP000