Running 2019 PloS Comp Biol iron metabolism model of Parmar and Mendes

[Tomas Radivoyevitch]

Wondering if you could guide me to getting this code to give time course results.
The cps files are here cpsFiles.zip

library(CoRC)
unloadAllModels()
(L=loadExamples())
runTC(model=L[[1]]) #runs fine
path="~/ccf/jarek/grants/msb/iron/parmar19sup/cps/"
(m0=loadModel(paste0(path,"IronMousePV3.cps")))
runTC(model=m0) # no results
(m1=loadModel(paste0(path,"IronMousePV3_Hemochromatosis.cps")))
runTC(model=m1) # no results

[Jonas D. Förster]

Hey radivot,

those models have save result in memory for the time course task disabled.
You can use runTC(save_result_in_memory = TRUE, model=m0).

Unfortunately, this is one of the easiest traps for fall into when trying out CoRC with certain models.
If you open the .cps file in Copasi and run the task, the result table will also be empty.

Best,
Jonas

[Tomas Radivoyevitch]

wonderful! thank you, it now works great!

…

On Mon, Feb 25, 2019 at 3:45 PM jonasfoe ***@***.***> wrote: Hey radivot, those models have save result in memory for the time course task disabled. You can use runTC(save_result_in_memory = TRUE, model=m0). Unfortunately, this is one of the easiest traps for fall into when trying out CoRC with certain models. If you open the .cps file in Copasi and run the task, the result table will also be empty. Best, Jonas — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#5 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ACXlT4Xl8741KnhIImcwUWLg5tnih38Yks5vRErWgaJpZM4bQO5s> .