jowch / aHDPs.jl

Finding αHDPs in amino acid sequences

aHDPs

Provides a basic tool for identifying αHDPs as described in Yount et al., PNAS, 2019 by applying the alpha-core formula described in that paper.

Example

using aHDPs
using BioSequences


ll37 = aa"LLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES"
core_ranges = findcores(ll37; window_size = 12)

core_seqs = map(core_ranges) do idx
    ll37[idx]
end