joshuak94

Joshua Kim's repositories

BAMIntervalTree

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vaquita-LR

Identification of structural variations

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bai_parser

A small BAI parser to test seqan3.

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biocpp-io

The Biological Input-Output library

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Bleacher

A tool for ChIP-seq normalization.

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compgen2021Capstone

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EBI_Journal

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seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

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WiggleTools

Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

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edgePy

A Python implementation of edgeR for differential expression analysis.

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EvalSVcallers

Evaluate the performances (precision and recall) of structural variation (SV) callers

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genmap

GenMap - Fast and Exact Computation of Genome Mappability

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iGenVar

The official repository for the iGenVar project.

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lila_tournament_filter

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MouseControl2

A reimplentation of the original MouseControl plugin made by Noitidart

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neural-chessboard

♔ An Extremely Efficient Chess-board Detection for Non-trivial Photos ♔

MIT000

opentrons

Software for writing protocols and running them on Opentrons robots

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seqan

SeqAn's official repository.

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seqanCoverage

Generate coverage from a BAM/SAM file.

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SingleWorkflow

Single-cell RNA-seq data workflow

GPL-3.0000

skiplist

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skiplist-1

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SViper

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.

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