jooh

neuroconda

Conda environment for neuroimaging analysis in python, R, etc

matlab-studytools

Tools for running psychology experiments in Matlab.

Dcm2Bids

Convert DICOM images to BIDS

gwp

Gabor Wavelet Pyramid model for tensorflow

bindit

Painless bind mounts in docker and other container runners

pilab

Pattern information analysis in Matlab

sana

Representational similarity analysis (RSA) tools for python / numpy / tensorflow

automaticanalysis

Automatic analysis

johansmatlab

Basic utility functions. Required by all other Matlab code

PyGaze

an open-source, cross-platform toolbox for minimal-effort programming of eye tracking experiments

transplant

Transplant is an easy way of calling Matlab from Python

notebook_bids_OSD2018

BIDS presentation at Open Science Day, MRC Cognition and Brain Sciences Unit

altair

Declarative statistical visualization library for Python

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

conda

OS-agnostic, system-level binary package manager and ecosystem

cookiecutter-hypermodern-python

Hypermodern Python Cookiecutter

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

genericobject_rsa

jooh.github.io

website

LaminafMRIsimulations

Based on PhD work of Huang Pei (HP)

liu_gardner_2018_reanalysis

Use fMRI orientation/contrast dataset to make points about RSA best practices - https://doi.org/10.1523/JNEUROSCI.2453-17.2017

measurementmodels

Measurement models for representational similarity analysis of functional imaging data

MVPA_simulations

Simulations comparing sensitivity of various MVPA methods (LDC, Euclidean, SVM discriminant and SVM classification)

nipype_tutorial

Learn Nipype with these tutorial notebooks - go here to see them online -->

pybids

Python package to access BIDS datasets

pycortex

Pycortex is a python-based toolkit for surface visualization of fMRI data

pyrsa

Python library for Representational Similarity Analysis

sequel

Trial sequence generation in python

website

workshop_pybrain