jonaspleyer / 2023-autophagy

python bindings for the autophagy simulation

Getting Started

Create a new virtual environment and activate it.

python -m venv .venv
source .venv/bin/activate

You will need to have the rust compiler installed. After having initialized and activated the virtual environment, we can install the package.

pip install .

Install the required python dependencies

pip install -r requirements.txt

Example

For a short example with default settings look at run_sim.py

Documentation

You can find the documentation under jonaspleyer.github.io/2023-autophagy.