Jonah Procyk's repositories
phage_display_ML
ML applied to phage display sequence data
oxdna-viewer
oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
PythonNetworks
Creation of a sampler for creating Coarse-Grain representations
oxDNA-1
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
pytorch-intro
Small collection of pytorch Models for aptamer sequence data
oxdna_analysis_tools
A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
learnergy
đź’ˇ Learnergy is a Python library for energy-based machine learning models.
ox-serve
Backend for driving oxDNA simulations from oxView.
CRBM
Convolutional Restricted Boltzmann Machine
TCR_Analysis
TCR_Data Analysis Python Scripts
clionsettings
settings for CLion
ProteinMotifRBM
Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
keras_extensions
A collection of small extensions to Keras (RBM, momentum schedule, ..)