Joeycho's repositories
cornerstone3D
Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.
FIFAI-Summer-School-2024
"Fair Federated AI" Summer School, July 19-21, 2024; 16:00 — 19:30 CET time
ITK
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
MIRTK
The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at
MONAI
AI Toolkit for Healthcare Imaging
segmentation_models.pytorch
Segmentation models with pretrained backbones. PyTorch.
Self-supervised-Fewshot-Medical-Image-Segmentation
[ECCV'20] Self-supervision with Superpixels: Training Few-shot Medical Image Segmentation without Annotation (code&data-processing pipeline)
surface-distance
Library to compute surface distance based performance metrics for segmentation tasks.
TotalSegmentator
Tool for robust segmentation of 104 important anatomical structures in CT images
Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
voxelmorph
Unsupervised Learning for Image Registration